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For orientation: the genome feature class corresponds to the main entry in a…
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Hello,
how can I setup the requested phylophlan databases for use on a cluster where compute nodes does not have network access.
I would like to install phylophlan and provide the DBs on a shar…
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There's quite a bit of interest https://github.com/sourmash-bio/sourmash/issues/2816 https://github.com/sourmash-bio/sourmash/issues/3070 https://github.com/sourmash-bio/sourmash/issues/3089 in using…
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[Suggestion to add amplicon resequencing data-processing functionality, brief description of new scripts to aid in this, and request for guidance on unit testing or code review]
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## Justification …
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At the statistical stage I am getting the error:
"statistics.StatisticsError: mean requires at least one data point"
It comes from line 758
avg_h = statistics.mean(cov_h)
I think it's becau…
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**#This following is the params.txt**
Command line: ./../SPAdes-3.13.1-Linux/bin/spades.py --careful -t 20 --pe1-1 /run/media/user1/storage1/5_hari_g/trimgalore_output_2/P5652_PC…
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Sorry to bother you.
I am an old user of Microbiome helper, and deeply love since it is easy to use. Recently, it is hard to get into google group in China, even with VPN, so I do not read your answ…
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Just downloaded the latest version
from GitHub:
https://github.com/claczny/VizBin
when running the setup I got these errors:
Downloads/VizBin/setupUbuntu.sh
Reading package lists... Done
B…
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Although Gretel is not designed for recovering large haplotypes, it should at least try its best. Apparently very large contigs will cause Gretel to write very large temporary files and lead to an `OS…
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Hi, is there any way to read a list of sample ids and remove them if they have 'NA'? I cannot see how to get the vector class into the subsample function from a list.
Thanks.
OTU_Met_F