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Hello,
I've run the WSSRankTest and noticed that the routine doesn't take into account the sample selection to compute the MAF of variants used in the test.
Example
vtools associate table1 PHEN…
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Hello,
Recently a bunch of variably niche uses have appeared where going more granular than barcode level is desirable - pulling apart the donor composition of the read space/count matrix would be …
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1. How do you think Phenolyzer will be used in Basic mode? As it stands, it starts as a drop down, but clicking on it doesn't actually drop down a menu. If I type in a term, e.g. breast cancer, we imm…
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Hi all,
I'd like to apply distribution based clustering to data that has already been denoised with dada2 and wanted to ask your advice.
The idea is to cluster together sequences that came from…
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I'm running VIVA in Google Colab. Julia is installed as well as the VIVA package, but I can't get it to save a visualization without crashing. Here is my command:
viva -f test_output.vcf -t Default…
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Hello,
I have run CPSR on some germline samples, and am looking at the biomarker section now. I see that class 4 and 5 variants overlapping the CIViC markers are considered, however, the biomarker…
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Is there currently a plan (or reason against) matching the output style of the compound het, pathway, and interaction tools to be more like the mendelian disease, de novo, and query outputs? Particula…
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Preferably, the variant download files would include if the variant is LoF in the gene's canonical transcript. Currently, this information is not stored in the curation portal. It could be added to th…
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**What is this request referring to?**
biallelic inactivation
**What is the name you would like SO to give the term?**
biallelic_inactivation
**What is the definition that you would like for t…
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## Issue or current state
Discovered this [comment](https://github.com/statgen/bravo_api/blob/9e43f4b52eaebdb88eda643c0f5c272294623b9b/bravo_api/models/variants.py#L360) regarding adding more sortin…