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Dear Authors,
The following code will give me the obs for all the cells. Each cell has a soma_joinid. Can I use this id as cell id? Will each time I query the database, the soma_joinid will be same…
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Hello!
I have some seqFISH data from Spatial Genomics generated by their 'genePS' system. I was wondering if anyone had some code to import this data into a SpatialExperiment S4 R/Bioconductor clas…
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From @prathapsridharan
```
pytest tools/cellxgene_census_builder/tests/test_builder.py::test_base_builder_creation[False-census_build_args0] -v
```
```
tiledb.cc.TileDBError: Enumeration: Un…
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### Need
When looking at a list of TODO validations, the user will want the necessary information to debug or resolve the validation. This includes:
#### Entity Link
- The CELLxGENE Collection U…
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https://laminlabs.slack.com/archives/C07DB677JF6/p1722004084053869?thread_ts=1721641414.745239&cid=C07DB677JF6
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Hello!
I hope you had a nice weekend, and sorry to come up with yet another question 😅 :
There seems to be an issue (which I have also seen in some versions of the HsapDV ontology) where all e…
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#### API
/api/tasks
#### Payload Shape
List of items similar to:
```json
{
"entityType": "SOURCE_DATASET | ATLAS | COMPONENT_ATLAS",
"entityID": "1231432423",
"atlasIDs": [] ,
"system":…
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- Link to publication: https://doi.org/10.1101/2021.12.12.469460
- Title of publication: Tabula Microcebus: A transcriptomic cell atlas of mouse lemur, an emerging primate model organism
- First …
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## PRs
**PRs in process:**
* #3208 `kerl/r-min-sizing`
**PRs to be created:**
* `upgrade_domain` for `DataFrame` objects:
* Implement and test `upgrade_domain` in C++ for dataframe
*…
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Hello,
I am new to bioinformatics and these work flows in general, but I am attempting to learn by working through different tools.
I loved the GEARS paper, and I am trying to wrap my head arou…