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Hallo all,
I was reading the pepatac publication and I read a bit their pipeline. I find it to be the most interesting and comlete pipeline for ATAC.
Since it is very tough to get the whole pipeline…
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Hello,
When enableSegmentDragging(true) is set, segment will not detect whether endTime is out of range.
https://github.com/user-attachments/assets/15087faf-98e3-427a-a49d-45e58f94c0c7
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Recently I had a weird issue when running `snap.tl.macs3` on a cluster, my script would get stuck for a while and then throw an error related to parallelism issues:
```python
0%| | 0/12 [00…
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Thanks for the great tool!
I'm a bit unclear why there is a difference between the number of overlapping peaks found by bedtools overlap and findOverlaps (which find the exact same number of overla…
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The Generic rules:
- pyrra_requests_total (See [here](https://github.com/pyrra-dev/pyrra/blob/a5e3b4606daf843156111f791ff669d864163e7a/slo/rules.go#L1234) and [here](https://github.com/pyrra-dev/pyrr…
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RSAT `position-analysis` detects k-mers that present any type of positional heterogeneity by running, for each k-mer, a chi-squared homogeneity test on its profile of counts per positional windows com…
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I am running monocle 2 to analyse some scATACseq data.
When I run:
data_atac
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Hello,after I used the clipper,I found the three results:
4008101 Sep 13 20:30 EXAMPLE_PE.rep2_clip.A03.r1.fq.genome-mappedSo.rmDupSo.merged.r2.peakClusters.bed*
54949513 Sep 13 20:30 EXAMPLE_P…
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Hi @KenjiKamimoto-wustl122,
Incredible package, its documentation and implementation are awesome!
In the [preprocessing tutorial of scRN-seq](https://morris-lab.github.io/CellOracle.documentatio…
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like MULE DEER,
it lives in 3 maps, PARQUE FERNANDO, SILVER RIDGE PEAKS, RANCHO DEL ARROYO
you hunts one in SILVER RIDGE PEAKS,
but when you check MULE DEER in PARQUE FERNANDO,
the one you hunt in…