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Hi,
After running a BSLMM, I used some tools for analyzing BSLMM outputs given here: [http://romainvilloutreix.alwaysdata.net/romainvilloutreix/wp-content/uploads/2017/01/gwas_gemma-2017-01-17.pdf…
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Hello,
When giving a file of files (fof) to create a graph with gatb::core::debruijn::impl::Graph::create() (-in parameter), I ran into several problems regarding relative paths. I am using the lat…
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Current there are some inconsistencies on how Plink and Gnocchi deal with missing data values. This is leading to some differences in the results of the two tools in their main GWAS application. We sh…
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I generated a *.gfa file from an alignment in vg. When I run:
reveal bubbles -r ref test.hal2vg.gfa >test.hal2vg.bubbles
Traceback (most recent call last):
File "/usr/local/bin/reveal", line 1…
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In preparation to supporting R 3.4, we are migrating any non-bio-related packages over to the conda-forge channel. This issue aims to organize and track the progress.
Below are the results of:
`…
daler updated
7 years ago
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**Goal**
Become comfortable working with variant calling (VC) pipelines across various workflow systems.
**Deliverables**
- [x] #2 run simple bionode-ncbi + tools bash script (no filtering)
- [x] #3…
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Hello, Here is my app, i don't know why ggplot allplot1, allplot2, and table alltbl1 were not rendered, however, after remove (DT::dataTableOutput("alltbl1")) from UI, everything is fine. So, Could y…
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Howdy all, and thank you for your interest in this hackseq!
I'm hoping we can all introduce ourselves ourselves and start some conversations before we meet in Vancouver.
I am an assistant profess…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/andreyshabalin/ramwas
Confirm the following by editing …
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Will likely also need the docker images.