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I am using ABySS 2.2.4 on Mac and GNU/Linux to assemble a genome de novo using paired-end Illumina reads. At the moment, my comand is:
`abyss-pe --directory=output/folder name=organism k=25 in='../…
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Hi
How to use wtdbg-dot2gfa.pl, and any recommend parameter for wtdbg-dot2gfa.pl
Thanks
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Any idea what this error could be about? Or if it would impact the output fasta?
Thanks,
KF
gfatools gfa2fa asm.p_ctg.gfa > p.contigs.fasta
[W::gfa_fix_utg] one or multiple A-lines on 'utg00…
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This is still not fixed :(
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Hello! I'm having some trouble getting the twofoo example from the [running spacegraphcats page](https://github.com/spacegraphcats/spacegraphcats/blob/master/doc/running-spacegraphcats.md) page to wor…
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We have scripts such as:
Common_unitigs.py
that take all bins as command line arguments. These may files with thousands of bins due to linux limit on command line length.
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Very great tool!
Have you planned to provide Python bindings of the Bifrost library?
I am asking bc/ I would like to e.g. identify unitigs that contain all colours, and I guess this is trivial u…
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Dear Community,
I want to align some RAD data of a non-model organism to a genome of the same species.
For that I followed this tutorial so far: https://github.com/ekg/alignment-and-variant-calli…
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I am following hifiasm for our plant genome assembly, and noticed that with my code update from hifiasm v03 to v05 the assembly n50 increased but in my genome 2 appearant misassemblies got my attenti…
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