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Hello,
Using Master here,
Since the new developments for better estimating domain of life, it seems not possible anymore to add a single-copy HMM gene collection into the CONTIGS.db:
```anvi-…
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It seems that 95% of my runtime on my (viral) application is in this step. The number of vertices is pretty small usually (thousands). But it can take tens of minutes. Coverage is high, so perhaps thi…
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As mentioned in #41, `draw_heatmaps.py` is not yet ready to handle empty data: Python will throw an error when trying to make a heatmap of nothing, and the pipeline stops.
I suggest to patch this w…
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When trying to create an anvio v5 (installed through conda on linux ubuntu 16) for viral contigs, I came across an error in the documentation of the above. I don't want to split my contigs because the…
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## Expected Behavior
Hi there! I am hoping to cluster a fasta file of contigs from an assembly of 134 samples.
## Current Behavior
Getting error message that entries are longer than max sequence…
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Hey there,
I am attempting to use viral contigs (from VirSorter) as "genomes", but I get an error
`Traceback (most recent call last):
File "/srv/sw/miniconda3/envs/dRep_2.2.4/bin/dRep", line 33…
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Hello,
I get scaffolds showing up at the end of my assembly that contain a single N as their sequence.
eg.
>scaffold4685,1,f4740Z1
N
This is in the *.scaffold.fa file after running arks+LINK…
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Hi,
When I used SvABA refilter, I got the following ERROR message. It seems that SvABA refilter does not support -Y and -B. Do you have similar experience? The FH Version of my SvABA is 134.
…
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When using Jovian v0.9.2-1-g5668474 the combine failure of above mentioned rules remains.
**Terminal output:**
```
Activating conda environment: /data/BioGrid/ERVINGS/Runs_Respiratory_MiSEQ_RIV…
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Hi,
May I know is it suitable to do taxonomy prediction for assembled contigs from megahit in kaiju? Thanks in advance.