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Hi,
I am trying to run this program while generating the database I have a fasta file with a bacterial genome. I tried to make .edx file and .acx file but the .acx file comes out empty, and the out…
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Working with a database I created using bacterial, archaeal and fungal genomes, I am now getting the following trying to run it with some reads:
Error reading _ebwt[] array: 1352, 7627660928
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When I try to run abricate against my bacterial genomes .fna (total 20 in number) using the VFDB database, the result shows that there are no genes in any of them.
Command used: abricate --fofn lis…
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Hi,
I am analyzing multiple bacterial genomes with very little programing knowledge. The way tormes parses and summarizes the results from all the genomes in tabular files is very helpful!
Tormes ha…
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Hello There,
1. I have little doubt about normalized_16s.gene.txt/normalised_16s.subtype.txt/normalised_16s.type.txt
The gene names which I can are ARG genes, so, can u just breif me about the 16s f…
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Hello,
Thank you for publishing this great tool.
I am having trouble with extracting the downloaded Bacterial DB .xz file provided and getting this error:
"xz: (stdin): File format not recogni…
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Hi,
I have the following problem and I am really open to suggestions, as I don't know if my reasoning is wrong or something else.
I have genomic reads (ONT and PacBio) from an aquatic plant.
We kno…
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Hi,
We applied Centrifuge to our full-16S rRNA reads sequenced with the MinION. While the results look good in general, we run into problems when comparing Kraken2 and Centrifuge classifications w…
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Hi,
I have some problems when I build reference database.
I download all bacterial gff and fna files from Refseq and use your run-example.sh to build the reference database(I have modified the ru…
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I would suggest rebuild metabuli viral reference database using current official viral taxonomy provided on https://ictv.global/vmr
Technically, it is not difficult.
Your tool processed it very smo…