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For example, I want to use the agaricales_odb10 as reference database to pick single copy orthologs, how can I change the Fungi_odb10 to Agaricales_odb10?
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## User Story
> AS a website user
>I want to add a visual interpretation of genome completeness to relevant datasets
>So that it is easy to see the BUSCO genome completeness scores
### Accepta…
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Hi,
I ran compleasm and BUSCO using protein mode on my annotated genome. Compleasm's result is not good. Is there a change in your hmmsearch or something else? Here are the results:
**Compleasm**:…
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Although the version of QUAST version available online (http://cab.cc.spbu.ru/quast/) states it is 5.0.2 it seems to be still running BUSCO 3.0.2 (Current 5.3.0) and the odb9 (Current odb10) datasets …
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Hi,
I have been reading many issues here, but it is still not clear to me how to set the manual cutoffs. I have a nanopore assembly. By running your pipeline, I got this:
![PB cov](https://githu…
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Hi,
I would just like to make a return on the scaffolding of my assembly (Sanger technology) with PacBio reads (30x coverage), by using pyScaf.
pyScaf is fast and generates interesting results …
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**Are you using the latest release?**
Yes
**Describe the bug**
Genome is assembled and gets a high busco score with 5.0 comes out to ~95% with our genomes. But after annotation and running busco …
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Hi,
I met a problem, the BUSCO score decrease after update.
The BUSCO v5 score was 91% after EVM (based peotein model).
Next,I performed PASA pipline to update my annotation with default parameter…
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Hi Alex,
I used busco to evaluate the genome_assembly.fa file and the resulting file for syngraph, I extracted the *full_table.tsv file as shown below,:
0at7088 25 6419737 6528949
1at7088 28 9918…
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Hi,
We have tried helixer on the Cupressus sempervirens genome assembly
https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_028749045.1/
but obtained poor busco results on the 38652 called transcrip…