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### Name of the tool
cellranger multi
### Tool homepage
https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov
### Tool description
is a…
pcm32 updated
2 months ago
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Hi,
I'm using dsc-pileup and freemuxlet to identify donors/doublets of a two-donor mixture. I pre-filter the bam file using the popscle_helper_tools (https://github.com/aertslab/popscle_helper_tool…
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Hi,
Thank you for developing the InSTAnT package for exploring the patterns of gene-pair co-localization in spatial transcriptomics data.
I have a MERFISH dataset and would like to use this soft…
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### Description of feature
An option to enter the pipeline at the post-merge step with a finalized Seurat object `.rds`. This would allow for subset analysis for a specific cell type for example.
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A recurring feature request — provide automatic chemistry detection, at least in the case where we know that the input data is 10x. This would look something like passing `-c auto10x` and `simpleaf` …
rob-p updated
1 month ago
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I'm trying to get the variants for each cell in my data, but I see that barcodes are not in the vcf file produced. Is there a way to match the variants with the barcodes?
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Hi @bmill3r ,
Thank you for developing this tool. Deconvolution and annotation have worked well for me thus far. I am now looking to attempt to do CNV analysis on the deconvolved cell types (I have…
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Chemistry(darkreaction) determined in oligoR1: darkreaction
Chemistry(darkreaction) determined in oligoR2: darkreaction
Chemistry(darkreaction) determined in cDNAR1 : darkreaction
2024-11-07 00:0…
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For new term requests, please provide the following information:
## Preferred term label
PIPseq
Asteria scRNA-seq
HIVE CLX
## Textual definition
PIPseq: The Fluent BioSciences PIPseq…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Oshlack/Barbie
Confirm the following by editing e…