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copied from https://github.com/ESIPFed/sweet/pull/224#issuecomment-811512124
Follow ups:
@smrgeoinfo : That would be a good thing. The chebi URIs are in the GSO elements module. But we don't want to…
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Hi Guys
When importing Reactome data I frequently connect to entries from uniprot or chebi. I keep a log of any that are missing. Attached is the log from my latest run.
If there is a better way…
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In biolink 2, we are following these rules:
if it has a smiles:
if '.' in smiles:
MolecularMixture
else:
SmallMolecule
else:
ChemicalEntity
That last one can be improved. …
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```yaml
id: GO:0030599
name: pectinesterase activity
namespace: molecular_function
def: "Catalysis of the reaction: pectin + n H2O = n methanol + pectate." [EC:3.1.1.11]
synonym: "pectase activit…
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Hi Peter
Looks like these Reactome pathway xrefs are missing:
gluconeogenesis (GO:0006094) = R-HSA-70263
fructose biosynthetic process (GO:0046370) = R-HSA-5652227
galactose catabolic process vi…
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Hi @balhoff
ChEBI terms used in the ontology should be limited to the pH7.3 list (see https://github.com/geneontology/go-ontology/issues/27012). Can you add a check for this?
Thanks, Pascale
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Hi Adnan,
hope you are doing well.
We have dozens if not more classes of anionic gangliosides in ChEBI and Rhea; but these are not currently classified as gangliosides, nor lipids. This issue …
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Here are a few instances in which the ChEBI id used in RefMol instances created on your end do not match anything at ChEBI. Solomon just updated the code for the ChEBI update script, so these issues m…
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could you provide the list of proteins that have zinc-binding sites based on UniProt?
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See issue RTXteam/RTX#1300
Example text:
```
match (n {id: 'UniProtKB:P05177'}) return n.description
```
produces:
"-!- FUNCTION: A cytochrome P450 monooxygenase involved in the metabolis…