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Hello:
I got an assembly from MeCAT, then removed removed heterozygous redundancy and assembled scaffolds using [redundans](https://github.com/lpryszcz/redundans). Then after filling gap with PBJel…
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Hello!
I am trying to run 10xR2C2 on my C3POa postprocessed data.
I am wondering if it is okay to skip ExtractUMI.py and MergeUMI.py ( but not MergeUMI10x.py )
After I run the C3POa_postpro…
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Great work !
I've successfully predict protein-SM complex structure using demo_6zcy.json, just similar with given predicted structure in demo_output. However, use of demo_6zcy_smiles.json failed. Ple…
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implement the consensus generation scripts from plot_alignments -> will lead to significant speed up!
(I didn't look at the code for ages, so it might take some time to get this running again)
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A user has asked for this option:
When using "-cluster_fast" VSEARCH builds consensus sequences considering terminal gaps in the alignment, so a lot of relevant sequence information on the flanking r…
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Hello, During the rule_reformat_filter_clusters step, only 36% of the clusters are being written, and I am not sure why. I understand this is happening in parse_clusters.py but have not been able to i…
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I am trying to use mCross to detect RNA motifs for an RBP using the alternative approach that skips the top n-mer detection step. I provide FASTA sequences for background and peak signals directly. Ho…
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when I run the code isONclust2 sort -B 200 -v 1.fq.I en countered this problem:
isONclust2 version: v2.3-e9da596
Batches output directory: isONclust2_batches
Minimum batch size: 200 kilobases
Km…
wenmm updated
2 years ago
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Hi,
I'm trying to map my consensus sequences from ipyrad to a reference genome, but there are no actual fasta files of these sequences. pyrad2fasta seems like a perfect option, but it only prints out…
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I was recently trying to reproduce the result of a 2014 paper in which they used repeatmodeler to identify repeats in a non model organism. They had 398 consensus sequences from repeatmodeler. However…