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I am trying to merge my contigs by closing the gaps with long reads. I ran graphmap in hopes of finding reads that overlap two different contigs (which would allow me to merge these), and got a mhat o…
ursky updated
8 years ago
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Hello,
Thank you for your software! After running MitoHifI I am receiving an error that suggests that there are two entries in the all_potential_contigs.fa file. I looked at them using `grep` and t…
ghost updated
1 month ago
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The GRCh38_UCSC2ensembl.txt file is missing contig mapping from the hg38 UCSC side. In using this file to remap UCSC contigs to Ensembl the map fails because of missing contigs.
For example, `chr1…
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Thanks for creating such a nice assembler.
In the research we're doing, we're looking to exploit the relationship between contigs in the assembly graph. Several other tools, such as `Recycler`, `Gr…
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This looks like a great tool.
I'm wondering though how well metabuli would perform classifying environmental mciroeukaryotes. Particularly, because it looks like that Prodigal is used to generate …
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Will you be adding alternate contigs?
thanks, Joe.
jo-mc updated
3 years ago
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Hello
I am trying to run the code:
SemiBin2 single_easy_bin -i assembly/megahit/coassembly/coassembly.contigs_renamed.fa -b mapping/bam/cobinning/*.sorted.bam -o binning/Semibin2
I think the…
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Hi, I'm having trouble running the workflow as instructed by the tool.
This is my command line used:
nextflow run /hpcfs/home/ing_quimica/v.rua/mettannotator -profile singularity --input /hpcfs/h…
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Hello developers,
Thank you for developing a nice benchmarking tool. How to generate reference genomes in json format for BinBencher assessment? I couldn't understand from the documentation…
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Hi Arkadiy,
Thank you for all that you do! I am noticing that FeGenie renumbers/names contigs within individual MAGs' depth files. For those of us who cross-reference output from different tools, li…