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In GitLab by @hoelzer on Jun 23, 2021, 22:31
```
python3 covsonar/sonar.py match --db rki.db --include S:L18F --include S:T19R --include S:T20N --include S:P26S \
--include S:del:69:2 --include S:del…
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In GitLab by @s.fuchs on Dec 1, 2021, 19:38
_Merges dev_delete_function -> master_
Sequences can be now deleted from an existing database
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In GitLab by @s.fuchs on Nov 1, 2021, 14:36
_Merges zero_len_hotfix -> master_
Recently, GISAID export contains sequences of 0 length which made EMBOSS Stretcher crash within covSonar.
This Hot Fix …
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In GitLab by @hoelzer on Jun 21, 2021, 21:12
I run into this bc/ I wanted to try something on my mac :)
```bash
conda env create -n sonar -f covsonar/sonar.env.yml
Collecting package metadata (rep…
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In GitLab by @Alice_Wittig on May 28, 2021, 15:39
I'm using covSonar version 0.0.10 and the database version 2 from 25.5.21. If I use the --count flag I get the CSV output instead.
For example:
``…
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In GitLab by @hoelzer on Jun 2, 2021, 16:38
I just cloned the repo and run
```
conda env create -n sonar -f sonar.env.yml
conda activate sonar
```
Then I tried:
```
./test.sh
```
which ended up …
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In GitLab by @hoelzer on May 25, 2021, 15:39
... so the user can distinguish both sampling strategies (and also UNKNOWN)
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In GitLab by @HartkopfF on Apr 13, 2021, 15:10
At the moment, only some ORFs are supported. For example, ORF1ab:XXXX is supported but not ORF1a:XXXX or ORF1b:XXXX.
It would be helpful to support all …
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In GitLab by @s.fuchs on Apr 22, 2021, 19:23
_Merges fixing_ORF1ab -> master_
added support of non-liner genes as caused by ribosomal slippage
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In GitLab by @Alice_Wittig on Apr 12, 2021, 15:39
_Merges readme_update -> master_