-
Thank you for this amazing resource. On the AWS landing page it sounds like there are tissue samples processed but I only seem able to find cell lines sequenced?
Apologies if this is just me missun…
-
### Operating System
macOS
### Other Linux
_No response_
### Workflow Version
v23.04.3
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No response_
### EPI2ME Ver…
-
Hi nanom6a team! I noticed that you used m6A sites identified by miCLIP from public data (Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification) in Fig…
-
Hello,
Question about 'RNA sequencing assay' (OBI:0001177) and 'RNA-seq assay' (OBI:0001271). In OBI, 'RNA-seq assay' is a subclass of 'RNA sequencing assay'. Are there examples of assays that fal…
-
Hi Sam, its me again here.
Tried running the program again with TCGA samples, but unfortunately immediately ran into this new error.
When running the preprocessing, I realise that the tag direc…
-
i am run GRN_infer.md. when i run adata_RNA,adata_ATAC=get_adata(matrix,features,barcodes,label)
>>> adata_RNA,adata_ATAC=get_adata(matrix,features,barcodes,label)
Traceback (most recent call last):…
-
Hi @marcus1487 !
I'm aware that the models for modified RNA bases are still in preparation, but is there any way of calling variants from direct RNA data? There doesn't seem to be associated calibr…
-
I tried to use this tool for Nanopore direct RNA sequencing. However, library type was not recognized.
-
**Describe the bug**
Hi, I've been trying to run SampComp on 6 samples of ONT Direct RNA-seq on a METTL3 KD cell line for some time, and have yet to get past the "parse transcript" step. I have 512G…
-
Dear,
Does this tool is suitable for working with long reads direct RNA seq? I am getting this error msg
Segmentation fault (core dumped)
Thanks in advance,