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Hi,
Great tool and documentation! I've read on your documentation page that the tool might work with whole exome data - could you please provide more information on that? Is possible and is it rec…
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Hi @brentp ,
For 14 exome samples with approx 3.3GB exome BAM each, I am receiving low distribution values of depths from mosdepth tool compared to other tools such as Qualimap. [On average: 26% lo…
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It is taking around 4-5 hours to run on one exome VCF of around 90K variants
(running on Xeon 32 core processor + 120Gb Ram workstation)
Is it normal run time you expect?
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Hi, when I run gatk Funcotator, A USER ERROR has occurred
```
Using GATK jar /export/.conda/envs/wes/share/gatk4-4.0.5.1-0/gatk-package-4.0.5.1-local.jar
Running:
java -Dsamjdk.use_async_io_re…
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Hello Sir/Ma'am,
1] Trying to apply oncocnv for exome data i.e. without reference to amplicon id. What should be modification required in bed file for applying it on Exome data.
Standard bed …
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NorSeq wants to use specific bed files for exome analysis, we need to make sure that these bed files are either a) compatible with the current reference file version (b37 decoy) or b) procure referenc…
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Apply Expands to exomes with known subclonal structure and assess how well this is resolved and how well individual mutations get assigned to their correct cluster (if we can access this info?)
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Please use this issue template to report a package that you know is documented but for which you found missing or incorrect documentation on jsDocs.io.
**Note**: If the package itself has no docume…
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When I try to run the following command awk shows division by zero attempted error
Command
`perl ./CoNVaDING.pl -mode StartWithBam -inputDir /san2/exome_cnv/samplebam/ -useSampleAsControl -control…
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### Resource and output dir:
```
/DCEG/Projects/Exome/SequencingData/DAATeam/Xin/ad_hoc/H_Pylori
```
### Testing Data
```
/DCEG/Projects/Exome/SequencingData/DAATeam/Xin/ad_hoc/H_Pylori/Data
``…