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While preparing to calculate a new gene family set, I notice that the 2018 gene family collection uses a naming pattern that is (I think) inconsistent with the general pattern throughout the Data Stor…
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Hi~ Thank you for this wonderful work, i would like to know about an issue i came across.
KIR3DL3, KIR3DP1, KIR2DL4, and KIR3DL2 are four frame kir genes which in principle every individual should h…
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Hi team,
I found myself recently needing to investigate the phylogenetic distance between 2 specific ASVs and thought it might be really useful if Empress could visually highlight the full path be…
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Hi there,
I would like to use `kmtricks`, to use `HowDeSBT` as [this example](https://github.com/tlemane/kmtricks/wiki/Index-example) suggests that there is a convenient wrapper using the newest in…
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> Millions of human genomes and exomes have been sequenced, but their clinical applications remain limited due to the difficulty of distinguishing disease-causing mutations from benign genetic variati…
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Hi Ryan,
Things continue to work exceptionally well with Unicycler - thank you for such an easy yet powerful program. I'm getting hung up trying to complete one last sample (which is both pretty good…
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We talked about this already, but I'd like to take action and update the Datastore where appropriate.
There are a number of `gene_models_main` GFFs that have the **Name** attribute starting with _g…
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Hi @bastiaanvonmeijenfeldt ,
I was thinking it would be nice to have a CAT db based on the Genomes Taxonomy Database ( https://gtdb.ecogenomic.org/ ).
This will lose some of the comprehensivenes…
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Hi Mike,
Hope all is well with you
I'm revisiting our GenomeScope analyses with cleaner reads and was curious about a trend I see in many papers. As well as looking at other k-mer based assembly ev…
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# Scratch pad
hs38 primary assembly of GRCh38 (incl. chromosomes, unplaced and unlocalized contigs) and EBV
hs38a hs38 plus ALT contigs
hs38DH hs38a plus decoy contigs and HLA genes (r…