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- [x] Determine what data is accessible via API - @MariaJose501
- [x] Determine how API will be used within the shiny app.
We'll integrate:
- [ ] GTEx Tissue-Specific Age Group Signatures
- […
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I selected about 16,000 cells from 9 tissues of mouse and wanted to annotate with Cell ID. I followed the example code but got an error in RunCellHGT() function with default parameter. Here is what th…
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### Need
As a clinical geneticist I would like to be able to use COSMIC signatures, which can identify signatures of for instance DNA-repair mutations, which would lend confidence to the impact of …
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Dear author,
![image](https://github.com/aertslab/pySCENIC/assets/44579368/acca66f2-df2c-4ea1-8fea-06f61f868642)
```
Traceback (most recent call last):
File "/work/home/acp0wc9bsx/miniconda3/e…
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Hi,
I would like to thank you for sharing this amazing source code for the paper.
I'm confused about the chord diagram in Fig.3a, you mentioned the fig represents a comparative analysis of a t…
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Hello,
I have some clusters with differentially expresses genes generated using Seurat. I also have a highly curated gene list and I wish to perform enrichment analysis using these on each cluster …
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Hi SignatureAnalyzer Team,
Thank you for the impressive work and continuous maintenance of the tool!
I was interested in running this on very large single-cell RNA-seq datasets, so I tested on …
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Hi,
I have created a named vector and I used 1 for the value of every gene.
str(sigData)
Named num [1:253] 1 1 1 1 1 1 1 1 1 1 ...
- attr(*, "names")= chr [1:253] "IFIT3" "IFIT3B" "IFIT1" "IS…
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Hi there!
I've been interested in estimating the contribution of mutational signatures defined originally with whole-genome data to variant calls from panels such as MSK-IMPACT ; I wonder what the…
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Hi there. Thanks for the work on this package! I love the incorporation of autocorrelation.
I've been looking into the scores produced by Vision (seurat object as input) and have found that that sc…