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Hi @glennhickey,
I have a WGA of 63 lepidoptera species. I would like to update the alignment instead of starting from scratch. The easiest thing would be to replace a genome. I'm trying to look at…
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It would be useful to have complete genomes in the repository for Selenobot purposes (necessary for extending predicted selenoproteins).
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Just wanted to know if there was a way to specify the hg38 reference genome for the `CNV.create_anno` step, I couldn't find any arguments that allow this but I could have missed something. Thank you!
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I wanted to use DIMPL to analyze the genome of Xylella fastidiosa for ncRNA, but the genome that is deposited doesnt seem to work.
Here is a copy of the code in the first Jupyter notebook and the err…
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Hi,
I installed genome_uploader using the below two commands:
```
conda env create -f requirements.yml
conda activate genome_uploader
```
When trying to run `python genome_upload.py ...` , …
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Hello Genrich developers,
First off, thank you for creating a great tool. It's been easy to use so far. I was wondering if there is anyway to input a custom chromosome size file for hg19? For insta…
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### Description of feature
Create bedGraph for distribution of heterozygous sites across genome
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Hi all,
I would like to know how can we obtain the global methylation % of a genome using modkit pileup.
I know that with the fraction modified I Can derive for example the % of methylated cpg, but …
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Hi all,
we are assembling some haploid fungal genomes (using PacBio HiFi data). Would purge_dups be appropriate for removing contig overlaps in such an assembly?
Best,
Ricardo Ramiro