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Thanks for sharing the nice work!
But I find the performance presented in the paper is very different with methods in "Action Genome: Actions as Compositions of Spatio-temporal Scene Graphs" and "d…
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Would it be possible to move to python3? What tools require python2.7?
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Hello, I would like to introduce that I have developed a beta version of a graph genome browser for human genomics.
The name of the browser is "MoMIG" (Maple in Japanese): Modular Multi-scale Integra…
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Hi. I've been using your software to perform a pedigree study of whole genome sequencing data.I drew histograms of AB and GQ using Slivar DDC, and next I had a problem selecting thresholds based on th…
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ref #132, #125
some ideas for display!
1. response curve idea - show a graph of how much you have to remove to get rid of contamination. could fit that to sigmoid, use AUC kept to pick out what…
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[Would the Bifrost (I believe it is actually pronounced very similarly to beef roast) colored deBruijn graph structure](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02135-8) pro…
nmb85 updated
3 years ago
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**1. What were you trying to do?**
Mapping Illumina WGS data to a cactus-minigraph pangenome.
In case it is relevant, the pangenome was constructed with 5 marsupial genomes, which have a few lon…
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Hi,
I want to know usually how long does degust take to show graphs for WG results?
I am even running degust as a test for only 20 genes (2 replicates), but it is taking more than one hour.
Is i…
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Hi,
I apologize in advance for the lack of code examples but I have to estimate computational resources before starting the project and I was hoping to get some guidance.
We are working on a complex…
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Hi!
Can CHOP be used to do the actual read mapping, or does it just create a fasta file that I e.g will need to index with BWA and then map reads to? If so, I assume my final alignments will be rel…