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Hello, I would like to introduce that I have developed a beta version of a graph genome browser for human genomics.
The name of the browser is "MoMIG" (Maple in Japanese): Modular Multi-scale Integra…
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Per: https://github.com/ctb/2022-sourmash-sens-spec/blob/main/fracminhash-runs-simulate.ipynb
```
in M=100 k-mers, p of finding at least one hash is: 63.43% - scaled=100
in M=200 k-mers, p of fin…
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```
http://bcbio.wordpress.com/2013/05/22/scaling-variant-detection-pipelines-for-wh
ole-genome-sequencing-analysis/
```
Original issue reported on code.google.com by `geo...@marsel.is` on 28 May 2…
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## Target functionality
tINIT is an (umbrella name for an) algorithm that obtains a subset of a genome-scale metabolic model based on the gene expression (typically in healthy/diseased bulk tissue …
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This came up on microbial bioinformatics slack, thought I'd share - topic was selecting from many viral genomes.
> it should be possible to use large-scale ANI-style analyses to select the closest …
ctb updated
10 months ago
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Hello! I saw your recent preprint, "Scalable estimation of microbial co-occurrence networks with Variational Autoencoders" and I'm hopeful your method may solve my issues, but I wanted to touch base t…
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(Moved here from https://github.com/broadinstitute/pooled-cell-painting-analysis/issues/83)
Right now, the workflow has several stages and/or proposed stages
1. CellPainting illumination correc…
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Hello,
Thank you for creating this helpful tutorial. I have a question about the duplication in the E. coli genome. When I aligned to the E. coli spike-in genome, I found almost all mapped reads mark…
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Hi all,
Thanks for having develop these tools. I have run on test of synteny between 2 species with on chromosome-scaled reference genome and one more fragmented draft genome. I have aligned it wit…
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Is there a way to use this with custom genomes that are acquired de novo?
Also, would it be possible to support [sylph](https://github.com/bluenote-1577/sylph) or [skani](https://github.com/blueno…