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**Is your feature request related to a problem? Please describe.**
I started to remove (or replace by mehari) references to the HGNC table as requested in #1551. However, two references remain: the f…
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Thanks for providing the SCENIC+ public motif collection PWMs , it is very helpful !
I noticed that the version of the motif collection is "V10: 2022 SCENIC+ clustered motif collection (v10nr_clust…
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I've been using `data/hgnc/hgnc_complete_set.txt`, which is provided by EBI. But it is not reliable.
I should use `data/hgnc/Homo_sapiens.gene_info`, which can be obtained at [https://ftp.ncbi.nlm.…
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Hello!When I was running a large amount of data interaction, I had such a problem, how can I solve this problem?
This is my code:
cpdb_file_path = 'cellphonedb.zip'
metadata = pd.read_csv(meta_file…
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The goal is to use entrez gene_ids rather than hgnc symbols to link genes and transcripts, including dropping the hgnc column from the transcript table.
Phase 1:
* Update gene table schema and loa…
reece updated
6 months ago
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Can you publish and / or link to the final hgnc.owl? This is a great contribution!
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NCBIGene:6052 doesn't have a label, but it does have one at https://www.ncbi.nlm.nih.gov/gene/?term=6052
It also has name and label information in `gene_info.gz`:
```
#tax_id GeneID Symbol Lo…
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# Background and discussion
_ontology-mondo.jsonl_ data file is collected by PIS following [this](https://github.com/opentargets/platform-input-support/blob/150bde8f6ed472d1e3c01a8eb22ee2c6b43e92d2/c…