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Hi, was trying to use ORFik for my riboseq analyses, i encounter this error when running ORFikQC.
Using R 4.2.2, ORFik 1.18.2, window10
```
riboExp Saving, ofst files to: transcript.bam/ofs…
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~Blocked by https://github.com/Anthony-Nolan/Atlas/issues/1234~
### Tests to encode
Test cases: https://github.com/Anthony-Nolan/Atlas/blob/869-search-donor-E2E-tests/EndToEndTestCases/Search.md
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WSL2 is next on my list. I am trying to set up a Windows machine (my previous WSL2 seems like it got corrupted). I would like people to subscribe to this Issue and comment and help test it. There are …
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Covers ensuring all HLA typings are valid.
p groups, g groups, single alleles, and multiple allele strings can be verified against the nomenclature directly.
first field XX codes for an invalid …
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- [`SubmitDataRefreshRequest` is a timer function](https://github.com/Anthony-Nolan/Atlas/blob/2cc92f09ba3ad60616a6636b4fc07b9bb3125c06/Atlas.MatchingAlgorithm.Functions/Functions/DataRefreshFunctions…
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_Issue [HLA-803](https://jira.stsci.edu/browse/HLA-803) was created on JIRA by [Michele De La Pena](https://jira.stsci.edu/secure/ViewProfile.jspa?name=mdelapena):_
In the mvm_quality_analysis.py m…
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![img_20180726_013525](https://user-images.githubusercontent.com/12860358/43233044-43e03b34-9074-11e8-8235-dbc8590af2d2.jpg)
Good evening,
the Calibur's standard software seems to only support r…
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Per CPIC SOP guidelines, the HLA phenotype is expected to be classified as either positive or negative. Nevertheless, our reports indicate that the phenotype is sometimes recorded as n/a (not applicab…
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**Describe the bug**
Specific searches are failing to complete. When these searches are ran, ATLAS appears to stop processing in the RunMatchPredictionBatch operation, with SQL errors being logged i…
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Dear developers,
I have used Oktoberfest to generate a Spectral Library from a .fasta file, however, there is no proteinID information in this Lib. I have checked the settings few times, still didn…