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Hello, I encountered an error of `Error 137` (see log output below). Do you have any insights what might cause the issue? Thanks!
```
...
Processed 70000000 kmers.
Processed 70100000 kmers.
Pro…
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I have created u64 representations of a kmer like this:
```
for kmer in needletail::kmer::Kmers::new(seq, 32 as u8 ) {
let km = Kmer::from(kmer).into_u64();
```
Is there a function to revers…
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Using the glistmaker, I managed to create a .list file using a fasta file for the HG38 reference genome. While I am able to make .db files using this .list file, and while said .db files say they are …
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[Tue Nov 5 13:52:15 2024] Read in and count kmers for 112200000 reads.
[Tue Nov 5 15:05:27 2024] Found 109640387 reads.
[Tue Nov 5 15:07:42 2024] Finish sorting the reads.
[Tue Nov 5 15:15:52…
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I have a k2report file for which i have run bracken for abundance estimation. when i run the bracken i get the below error
$ bracken -d /mnt/e/krakenindexdb/16S_Silva138_20200326/16S_SILVA138_k2d…
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Dear cuttlefish authors,
Thank you for this useful tool. I have a large database of genomes and I want to reduce the redundancy to reduce the computational time, improve speed and reduce RAM usage …
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Dear all,
is there a way to find what is the best kmer for a given assembly (like SPAdes)?
I think it would be a nice feature to add (even through a wrapper script) just to make life easier. it …
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Hi @vshiv18,
I need help with the following error while building the index.
Command used:
```
EXE="/home/daanish/projects/AdaptiveSampling/sigmoni/index.py"
DATA_DIR="/home/daanish/data/hg38/da…
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Hi, I work on a highly heterozygous genome (2.4%). I used the default parameter to run HiFiASM. Based on the k-mer coverage the heterozygous peak is at 38 but HfiASM is using that as a homozygous peak…
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A miscellaneous collection of thoughts that are not big enough or well enough formed to put in their own issues, but should be noted somewhere.
We may be double-hashing things - hashing the hash va…