-
Hey,
Firstly,thanks for the great tool !
Can Giotto support cell-cell interaction analysis or ligand-receptor interaction analysis on merfish data?
Sincerely looking forward to your reply!
-
I'm using CellChat 2.1.1 and try to investigate the detailed ligand-receptor information. I have noticed that there are several new columns in `CellChatDB.human`, such as `ligand.symbol`, and `recepto…
-
Hello CellChat Team,
I am currently working on a project using CellChat v2 and have encountered what seems to be a discrepancy in the tutorial regarding the extraction of ligand-receptor pairs. I w…
-
Hello, first - very nice to finally see ligand receptor interaction connecting to gene expression :)
I am using nichenet through seurat and I was wondering whether it's possible to get a metric/scor…
-
Hi! This is a great package with many useful resources!
After looking into it, we were wondering if it can also be used to model cellular communication. More precisely, we would like to extend INDRA…
-
Hi
I am working on my single-cell RNA seq dataset that is pre-processed by using Seurat pipeline to analyze intercellular interactions. When I run my data by cell_signaling function, I realized that…
-
Hi,
Thank you very much for your Omnipath database.
Now I have some information about ligands and receptors, but I want to know what are the transcription factors and target genes downstream of…
-
In the previous version of DockQ, there were input arguments, -native_chain{1,2} and -model_chain{1,2}, that allow grouping chains for receptor and ligand. For example, if there are one chains (e.g., …
heol1 updated
2 months ago
-
looking forward to ligand-receptor script!
we would like to run the interactions between:
- Macrophages to all other cell types/subtypes
- DCs to all other cell types
- Epithelial to all other c…
-
Hi!
I used to PyMOL to add a molecule to a pdb file. PyMOL reads the new .pdb file just fine, but plip reads the added ligand incorrectly. Do you know what went wrong and how could I fix it?
Is t…