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Hi,
I'm testing this pipeline on some EM-seq samples we have recently generated and getting following error with TSS_cpg_bins.py
File "/Software/EM-seq/TSS_cpg_bins.py", line 254, in
normal_…
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Hi,
met a problem with ChIPseeker recently.
The first one is the region priority problem with "genomicAnnotationPriority"
My question is:
when I use genomicAnnotationPriority = c("3UTR", "…
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Hi there,
Thanks for keeping up with my questions. As bicycle is able to from differential analysis between two different groups i.e treatment vs control. I wanted to know if bicycle can perform com…
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Hello,
I am trying run DMR analysis on 19 whole-genome sequencing methylation data I have in the form of bed files.
When I run the Methmean_region() with all chromosomes, it takes too long and my…
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Hi Tanya,
I'm not including TAIR in the rule building process, but If I see any obvious outliers I'll elt you know.
These appear to be indirect for "chromatin remodelling"
HOG1 | AT4G13940 | …
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Please review annotations to GO:1900368 regulation of post-transcriptional gene silencing by RNA & children
**Note that these terms will not be obsoleted but there may be better terms to annotate t…
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Dear EpiScanpy team,
I am having trouble using episcanpy's ct.build_count_mtx() function. I strictly followed the tutorial and used the test datasets given to build the count matrices but found th…
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Hi, I have gotten AgIn to run smoothly with the examples, but when I use my own data the class.wig output marks everything has methylated, which makes me think I have made a mistake.
I have a cmp.…
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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue …
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Please provide as much information as you can:
* **Suggested term label:**
recruitment of lysine acetyl transferase to promoter
* **Definition (free text)**
The directed movement of a protein…