-
@emileyfadrosh reporting from GSC while @mslarae13 is presenting. They would like the submission portal to change the term "Environmental Package" to "Environmental Extension". See screenshot below.
…
-
See https://microbiomedata.github.io/submission-schema/env_medium/
env_medium description "Report the **environmental material(s)** immediately surrounding the sample or specimen at the time of sam…
-
Soil has been curated, need to complete this for the other extensions/packages
To do
- Generate ENVO terms query of slots to identify as relevant for each extensions
- Share lists to champions or…
-
Similar to the existing mapping DwC-ABCD and DwC-MIxs, there is a mapping between ABCD and MIxS needed. The new MIxS 6 version should be taken into account.
-
Putting on me for now because I still need input from others, but I will forget if I don't do this
The "replicate" column in the logsheets should be added to https://github.com/emo-bon/observatory…
-
- [ ] restore the `src/mixs/datamodel/__init__.py` as described below
- [ ] Are we going to distribute a PyPI package? https://pypi.org/project/mixs-linkml/ ?
- [ ] What extras should be included, l…
-
```shell
linkml-lint src/mixs/schema/mixs.yaml | grep "standard_naming" | grep -v "Permissible value"
```
> warning Slot has name 'HACCP_term' (standard_naming)
> warning Slot has name 'I…
-
The references links for the GSC MixS UviG and MIGSVi pages should be updated, these have new links:
MIGSUvIG: https://genomicsstandardsconsortium.github.io/mixs/0010012/
MIGSVi: https://genomicss…
-
Based on work done in the NMDC Ontology workshop. A substantial part of these terms would also apply to the MIxS soil checklist which @ukaraoz is curating.
To order the different terms, we looked at…
-
We want to leverage GH and repo content fully
Principles:
- Use GH for releases
- Do not use folders for releases
- Have documentation and code in the same repo.
- We might be able to retroa…