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Thank you very much for your software output, which provides a new workflow for viral group research!
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Building a new DB, current time: 03/09/2024 10:19:13
New DB name: /home/zhongpei/hard_dis…
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Hi, I really love using ape and have been using lots of the functions for calculating distance between sequences; thank you for this.
I've noticed the nucleotide substitution models that include nucl…
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Hi,
In the example above I can see proteins FASTA file of GCF_009025895.1_virus_proteins.faa. I want to calculate the gene abundance with virus gene sequence.Can we output the corresponding nucleo…
wfgui updated
3 months ago
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### Description of feature
Currently different analysis software in ARG screening workflow use different input sequences.
For instance, AMRFinderPlus and RGI use nucleotide sequence as input whereas…
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Hi, I tried to use bindash to process my fasta data. I first used the following command:
./bindash sketch mydata.fas --outfname=genomeA.sketch
The mydata.fas file size is about 50M, containing more …
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## Expected Behavior
After using “mmseqs easy-linclust” clustering, the retained sequence is non-redundant
## Current Behavior
After using “mmseqs easy-linclust” clustering, he retained seque…
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Instead of doing global alignment on whole genome sequences, align just the searched subtype ORF sequence to the full query sequence.
The searched subtype ORF sequence should be prefixed and suffix…
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Hi,
I use vclust script to classify viruses into species and genera following ICTV standards.
The script of assigning viruses into putative species (tANI ≥ 95%) is:
`vclust cluster -i ani.tsv -o …
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**Steps to Reproduce**
1. Launch “Ketcher” and switch to the Macro mode
2. Open this file [Macro sequence.zip](https://github.com/epam/ketcher/files/14652359/Macro.sequence.zip)
3. Go to the Sequ…
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I want to create a `variant_catalog.json` file to identify VNTR in FcRn gene using WGS sequencing data.
The FcRn gene contains a VNTR sequence consisting of three repeats of 37 nucleotides each, wit…