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Hi,
Thanks for developing the package!
I have a few dozens of samples with captured PacBio hifi reads averaging 4kb in length but >200x coverage in a 1.6Mb human genome region, which has a lot o…
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Hi,
I am trying to use genomescope to estimate heterozygosity and genome size of a fairly large plant genome, ~ 3.65Gbp. I am using the histogram of canu-corrected reads. Here is what I am getting:…
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[pacbio-alignment-issue.zip](https://github.com/vgteam/vg/files/794310/pacbio-alignment-issue.zip)
Here are some examples with true and predicted PacBio alignments.
For true alignments, I us…
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## Describe the issue
Hi. I have a Structural Variation VCF generated from PacBio data using pbsv and I want to annotate with CADD-SV scores which I downloaded from here- https://kircherlab.bihealth…
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It would be great to compare DeepSomatic & ClairS output or to generate a consensus vcf using both
https://github.com/google/deepsomatic
https://github.com/google/deepsomatic/blob/r1.6.1/docs/deep…
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I was wondering if bamsnap supports PacBio CCS reads. When I use bamsnap with my CCS bam files, it produces the following error:
```bash
Traceback (most recent call last):
File "/Users/sl17/Lan…
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Hi,
I am quite new to the field of metagenomic sequencing and we are starting a new project in our lab and want to use your pipeline to determine if some sub-strains emerge or abolish over time. Or…
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This requires a whole implementation of a parser.
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I we're trying to assemble the sequences using pacbio data and I've ran this twice; one with the short reads and another will the pacbio reads.
without short reads:
```
GetOrganelle v1.6.2b
g…
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Hi
I am trying to use the metamos software to analyse some pacbio data. When I try to run the pipeline I get this message:
Starting Task = preprocess.PREPROCESS
**\* metAMOS: Error: cannot correc…