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It looks like this set of analysis tools is set up for analyzing paired-end sequencing data. Is it also possible to analyze long read data (ONT, PacBio), which aren't in paired-end format?
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http://schatzlab.cshl.edu/data/skbr3/
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I have an RNA seq that I need to assemble from PacBio and when I send the script the program do not pass the stage 2. I work with PACbio long read Hifi sequence that end up being all around 12 mil…
A-pcd updated
3 months ago
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Hello,
I am working on processing a large number of 16S sequence files generated using PacBio sequencing technology, specifically 647 and 944 files in separate runs. I am interested in using the po…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Have you loaded the SQANTI3.env conda environment?
- [X] I have loaded the SQANTI3.env conda environment
### …
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Hello dear developers,
I will try PECAT for the first time for a diploid genome of about 500Mb and I am writing to ask for script recommendations. There are some template cfgfile files for some spe…
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Hi there,
Can Winnowmap be used with PacBio CLR reads rather than HiFi reads?
Best,
Ollie
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Hi,
I have a PacBio WGS BAM (whose reference genome is hg19) from a tumor, and I would like to use "CoRAL"
When I visited this site, I found there is a file like "https://github.com/AmpliconSuite…
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Hi,
I am trying to use genomescope to estimate heterozygosity and genome size of a fairly large plant genome, ~ 3.65Gbp. I am using the histogram of canu-corrected reads. Here is what I am getting:…