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Hey, sorry for bothering you with more issues.
I have an error with the pathway analysis could you please help me.
I am running seaborn 0.11.2 on Python 3.10.11
![Unbenann2t](https://github.com/sae…
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### Describe your issue
I run GSEA() for a goat RNAseq differention analysis results.
the prepare code is follow:
```
genelogFC
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```
2019-11-15 10:41:02.602 | DEBUG | pals.pathway_analysis:_change_zero_peak_ints:248 - Setting the zero intensity values in the dataframe
2019-11-15 10:41:02.667 | DEBUG | pals.pathway_analy…
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Thank you for your great tool!
I'm using EggNOG mapper to annotate my non-model organisms for subsequent enrichment analysis. The mapper outputs GOs for each gene and other terms in KEGG KO, Pathwa…
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Hi
I'm really enjoying your wonderful package, progeny
In pathway enrichment analysis and following progenyScatter, I can plot genes according to pathway.
I show the result of my analysis below…
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Hola, cuando trato de hacer un Heatmap me sale el siguiente error:
Secretion_system_htn%
+ drop_na(Cycle) %>%
+ get_subset_pathway(Cycle, "Secretion system")
>
> plot_heatmap(tibble_ko=Se…
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hi,
thanks for your tool ! I'm new to the pathway analysis and have quite a basic question: I imagine that pathway reported by MinPath are not all complete. I guess that's what is actually reported…
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Hello,
I have some clusters with differentially expresses genes generated using Seurat. I also have a highly curated gene list and I wish to perform enrichment analysis using these on each cluster …
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Hi,
I just trying to apply _diff_analysis_ function to the phyloseq object built with picrust2-predicted pathway abundance table.
The otu-table is like this:
pathway | sampleD1-10F | sampl…
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Topics:
- Metadata harmonisation (T2.5) for later analysis / integration
- What metadata the pipeline accepts
- Genomics
- Register workflows/scripts + identifiers + tags in WFhub + refer ID
- Proteo…