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Hi Seeman,
I downloaded few plasmids sequences in Genbank full format from NCBI for plasmid annotation and ran the following command:
`prokka ENT2_Contig6_len_41186_circ_NDM-1_Plasmid.fasta --ou…
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for plasmids as well as for phages
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For plasmid you will not get a good result if you just use the default settings.
I would recommend getting GENBANK files (.gbk or .gb) of all the plasmids that are similar to your one.
Say you g…
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Distribution.gb sequences are linear instead of circular.
Exporting circular sequences would make it less confusing for teams (although they can be used for cloning purposes as linear seqs as well)
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Hi,
When classifying some Refseq sequences I noticed that some plasmids are being classified as virus. For example the reference assembly of Klebsiella pneumoniae (https://www.ncbi.nlm.nih.gov/data…
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Hello,
I'm a newbie in programming and need help installing MOBsuite in my conda environment. I've opened a new environment to install the specific requirements. Here is what I installed before insta…
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Something that the GraphQL server can call to just get a total number for either stock.
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Hi! I've been looking at this tool and I think it could be useful for what I want to do. In the file `plasmids.fna` I have a set of contigs that may be plasmids, and I wanted to use `tadrep detect` to…
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Hello,
I have noticed that a discrepancy between the results of using mash screen with and without the winner-take-all (wta) option.
For context I am screening a number of genomes (more specifically…