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with below polygons, it does not provide same results doing intesrection A and B or B and A.
```
let polyA = [
[49.05351, 1.44728],
[48.43959, 1.88663],
[48.77105, 2.22033],
[4…
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Hi @kcleal,
I'm seeing some weird behavior from Dysgu around read counting and was curious if you could help. I'll preface this by saying the sequencing data I'm working with is not WGS/WES but i…
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In a specification such as the example below, singular tuning without the `Method.FORCE` flag fails because the expansion of the multi set as `exp(\sum A(T^j)/j)` yields a grammar that is not strongly…
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Would it be possible to capture hashes that do not have a polyA tail (i.e. some specific sequence instead)?
Thanks!
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Hello,
First of all: thank you very much for sharing this code with very clear description here!
After running the PAQR pipeline successfully, I am getting a list of differential usage of polyA…
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Probably not much to do here, due to the high line resolution.
Also, I just noticed that the latex formatting is broken :(
```julia
using CairoMakie
x = y = -2:0.005:2
f(z) = 1 / (z * (z^2 -…
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Hi,
FASTdRNA is an easy-to-use workflow for processing direct RNA sequencing data. It makes the processing flow simple and lets the analyzing steps be done consistently, saving users a huge amount…
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Hi,
I would like to ask about ogap realignment of single-fragment (non-paired) reads around regions where there is a poly-A or poly-T or low complexity region where bowtie2/bwamem are unable to prope…
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I encountered the following problems when running. What do you think is the cause of the problem? Thank you very much.
```
res = do_pipeline(
+ out_path ="...",
+ counts_file_dir = …
wyt14 updated
3 months ago
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Hi,
I would like to ask about ABRA realignment of single-fragment (non-paired) reads around regions where there is a poly-A or poly-T or low complexity region where bowtie2/bwamem are unable to prope…