-
# Protein Inception | Liam's Blog
Protein design by hallucination. DeepDream, Markov Chain Monte Carlo (MCMC), KL divergence, gradient optimization, scaffolding functional sites, SARS-CoV-2 receptor …
-
* RNA-level predictions: free energy changes associated with nucleotide changes within a window (X bp before, X bp after) a nucleotide change; screen for RNAse targets within sequences (not sure if th…
-
@tnrich
I am switshing to use OVE from prevoiusly using Benchling where I had several hundreds of proteins annotated. In benchling you can save features both as proteins and as DNA. Is this possibl…
-
Hello,
I am new to protein design so this is a noob question , I'll close the issue asap.
I want to predict the complex of a designed monomer (protein 1) and another (protein2) which is an antige…
-
Hi!
Thank you for making available your program, it is very useful.
I have some questions about the design of protein-protein interface. I run the next command:
./UniDesign --command=ProteinDesig…
-
I have a complex study design with not all antibodies present in every sample (there are 24 in total).
I would like to run protein batch correction using harmony with 10 PCs, the number of PCs gets c…
-
**Describe the bug**
Updating an atom's residue-relevant metadata does not update the same data on the corresponding residue object. Editing the residue also doesn't update the atom. I'm not sure…
-
The score structures stage (stage 6) generates `structure_scores` files and `all_fragment_scores/frag_scores` files. Per the README and reading some of the closed github issues, the recommendation to …
-
Hi,
Suggestions for new additions:
#### 1. MHCFlurry for perhaps being a potential brick for MHC 1 class proteins binding affinity.
- Repository: https://github.com/openvax/mhcflurry
- Pap…
-
I'm working with Dataset 3 and am trying to compare K50 values for proteins that share a fold. I can't see an easy to way to identify which proteins go to which domain (or fold) from the columns in "K…