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**Describe the issue**
RepeatModeler Round #4
Searching for Repeats
-- Sampling from the database. . .- Gathering up to 91731253 bp
FastaDB::compact - Error could not locate file /home/xly/work8…
YDD99 updated
1 month ago
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https://wu-tz.github.io/2024/07/17/genome-anno/
主题:基因组注释相关参考: 基因组注释(一):重复序列注释 | 生信技工 (yanzhongsino.github.io) 使用RepeatModeler从头预测基因组重复序列 | BioChen 博客 【基因组注释】RepeatMasker和RepeatModeler安装、配置与运行避坑 - 简…
Wu-tz updated
1 month ago
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- https://herv.img.cas.cz/
- https://www.girinst.org/repbase/
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- https://github.com/mlbendall/telescope
- https://github.com/adamewing/tebreak
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**Describe the issue**
Running Ltr_retriever...Died at /software/RepeatModeler-2.0.4/LTRPipeline line 693.
A concise description of the bug, including any error messages.
**Reproduction steps**…
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Hi all,
This seems to be an issue that is popping up now and again (e.g., https://github.com/bioconda/bioconda-recipes/issues/25559). This was supposedly fixed, but I'm seeing it again.
The issu…
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- [x] RepeatModeller
- [ ] RepeatMasker
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Hey, thanks for the tool. How can I merge the output library of TEsorter with the repeatModeler repeat library to run RepeatMasker? Further, can I directly input the output library of TEsorter in Repe…
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I'm in the process of annotating the genome of _Icerya purchasi_ (https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_952773005.1/) and have come across a large problem.
The final RepeatMasker annotat…
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Hi, I am using this the --make_annotaion preprocessing to run a multiple samples TE detecting,but after I ran out the --make_annotation,then I use -1 -2 to add sample,and find a repeat annotation step…
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Hi,
Do you familar with RepeatMasker? And how to prepare ReapeatMasker lib using EAHelitron results?
Best,
Kun