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Hi,
I encountered these two errors while running velocyto... the loom file is created.
2019-02-03 22:25:37,857 - DEBUG - Counting done!
2019-02-03 22:25:38,494 - DEBUG - Example of barcode: AGG…
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I am trying to identify root and end points use the Markov random-walk model with the rna velocity package. The plot I want to generate is Fig.3C Diffusion and Back-diffusion part in the paper.
I t…
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1) spend more time on last 3 days and less on processing raw reads
differential isoform analysis?
minimum # reads per cell
umi-counting with kallisto how to aggregate umis from transcripts to genes…
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Hi developer,
Connecting to `loom `file output by `RNA velocity` ('https://github.com/velocyto-team/velocyto.py') produced this error:
```
lfile
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Hello,
I am attempting to run compute_lineage_drivers(), but no matter what value I set for "lineages" I keep getting a value error.:
```
File "", line 421, in combined_kernel_analysis
File …
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Hi,
I used the 'cellranger multi' command (cellranger v6.1.1) to process my data. I am now trying to use velocyty (v0.17.17) to ascertain the counts. Is there any guidance on how to use the velocyt…
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Hello,
I have got the following error while running show.velocity.on.embedding.cor function.
fit.quantile
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@xiaoyeye great tool! when I run analysis get error like this.
The adata file is a subset of a big file and then merge with the velocyto file.
```
(TFvelo_env) dengzhen@dengzhen-Super-Server:~/co…
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Hi velocyto-team,
Velocyto.py is a powerful pipline for single cell RNAseq analysis, thanks a lot to your excellent job.
I'm fresh in RNA velocity ananlysis and recently I met some issue abo…
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Dear STAR-Team,
I was trying to use STARSolo to generate spliced/unspliced matrices from SmartSeq data. However, I receive the error, that this is not possible yet. Could you include support for th…