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### Aims/objectives.
The nomenclature for RNA types (table `rna_type`) is fixed *e.g.*
```mysql
+---------+-------------------+
| id | name |
+---------+-------------------+
…
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Hi @benjjneb
I've been using your wonderful dada2 pipeline for years now but I encountered the below error yesterday for the first time. I'm pasting the relevant subsection of the log below. The 1…
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**UniProt UniRule (ID and label):**
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
IEA with UR000107549 GO_REF:0000104 43
GO:0000463 mat…
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Hi
Thanks for a great tool.
Have you considered a scoring scheme taking the presence of e.g. rRNA genes into account to prioritize bins meeting more of the MiMAG requirements? (https://www.natur…
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> auc_dis_all(all.auc.1y,
+ dataset = names(list_train_vali_Data),
+ validate_set=names(list_train_vali_Data)[-1],
+ order= names(list_train_vali_Data),
+ …
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Hi,
Thank you very much for great tool!
I have encountered error when using DFAST for rRNA prediction - no rRNA genes in output.
DFAST was run in debug mode and this is my barrnap log output:…
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Dear Dr.Han,
I have a problem about mapping when I used the small RNA pipeline. I follow the "install" and install the genome. But I failed in mapping and I don't know how to solve it.
Here is my…
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Hi, I was trying to assemble some endolithic green algae chloroplast 16S rRNA from a coral metatranscriptome. I have the database for multiple strains and I prepared the database following the instruc…
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Hello,
I don't have access to the raw FASTQ files - I only have Trimmed reads. Is there anyway of skipping the cutadapt part of the pipeline and going straight to bowtie to remove the rRNA?
Than…