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- In my opinion the markers are too large, even for relatively few datapoints (even worse for more datapoints)
- For metadata plots one cannot nicely see how diverse clouds of data are since they are…
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Dear all,
What is the corresponding table in case of mouse genome in this command?
genes.df = read.table("gencode.v19.annotation.gene.bed");
Thanks
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Hi, I’m just starting out in this field.
We have an scRNA-seq dataset that includes 438 million paired-end reads (2x150bp) from approximately 8000 cells sourced from tissue samples. We processed the …
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@adkinsrs
3 datasets (ScRNA-seq - P8, P12, P20 mouse cochlea (Michalski 2023; SnRNA-seq - P8 mouse cochleae (Michalski 2023; Mouse, scRNAseq,postnatal mouse utricle,raw matrix (Jan)) ), from the cu…
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Hello DcjComm developers,
First, thank you for your excellent work on the DcjComm package!
I am currently working on a project using Seurat to analyze single-cell RNA-seq data, and I would like …
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Hello,
Thank you for developing this nice tool.
I'm interested in analyzing allele-specific expression (ASE) in my single-cell RNA-sequencing (scRNA-seq) data. This data comes from offspring tissues…
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Hi Cytospace team!
I have encountered some problems where the code stuck at this correlation = (v2.T.dot(v1) - sums / n) / stds / n, staying there for over 24 hours. Another issue is the concurrent…
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Hey,
Sorry for asking here, don't know if this is the place to ask. First of all thanks a lot for this amazing book! OSCA is really helpful!!
I have a question regarding the section [3.4 OSCA Mu…
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Hi, I'm just wondering if VarTrix can be used for variant detection in ONT long-read data or is it just exclusively for short-read single cell sequencing data? Has anyone tried this and succeeded?
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# Contribution Guidelines
1. **Initial Setup**
- Clone the repository: `git clone `
2. **Update Local Content**
- Ensure you’re up to date with the development branch:
```bash
git ch…