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Hi,
Thank you for your great tools for single cell multi-omics analysis. I successfully ran the cite-seq demo but failed to ran our scRNA+scATAC data with following error report:
The input …
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Hi,
Thank you for developing this incredibly useful pipeline. It has been instrumental in my scRNA-seq analysis work. I have encountered an interesting issue while using the script provided: when u…
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Hi,
I was following the documentation to do the scRNA-seq analysis, but for the post-training analysis, it took a long time for me to embed the cells and the genes, is this normal? Or am I missing …
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I have downloaded a PBMC 3x scRNA-seq dataset (10X platform) as a reference to run DWLS spatial deconvolution for 10X Visium dataset. The analysis requires a metasheet with cell annotations and class …
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scanpy is a popular python package for scRNA-seq analysis and processing.
It would be great to accept anndata objects.
https://icb-scanpy.readthedocs-hosted.com/en/stable/
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@mandichen
Hi,mandichen
Good job and I am very interested in your research, but I have some questions.I used the sample data BM2_v0s0_n_200.h5ad and Macosko_cell_cycle_genes.txt to get the follow…
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Dear Dylan,
Is the reference scRNA-seq data used in the J20 Hippocampus Slide-seq analysis available in this repository?
According to the code (https://github.com/dmcable/spacexr/blob/master/Ana…
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Hi,
Thanks for developing this awesome package for measuring differential expression analysis in scRNA-seq through mixed modelling!
In the manuscript, I saw the co-expression analysis. Can you plea…
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In the current version 2.1.2 of the scATAC analysis pipeline, some samples encounter SIGNALS errors during merging due to high memory usage.
**This issue will be optimized in the next version.**
T…
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To expand the MC2 data model, data type-specific metadata models should be assembled and reviewed by the community via the Request for Comments process. One strategy for implementing is as follows:
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