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http://docs.python-requests.org/en/latest/
https://github.com/reclosedev/requests-cache
"requests" is a module much better than build-in urllib and urllib2.
"request_cache" provides a cache for req…
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Useful for huge studies where the samples are actually unrelated. Unrelatedness could be one or more of the following:
- Different number of fractions
- Different instruments
- Unrelated conditions…
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### Description of the bug
e.g. when not specifying any factor column. It should either just write the file with all the same condition, or fail with a nicer error.
### Command used and termin…
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I'm currently adding MSFragger as a search engine for ProteomicsLFQ. When running the minimal test profile I ran into an issue with MSstats. The tool could not figure out the fractionation of the samp…
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A large benchmarking study is trying out proteomicslfq together with pmultiqc.
They are looking for a list of metrics. Maybe some of them could be directly added to pmultiqc.
https://docs.google.c…
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I changed the urls for the data and metadata to point to the correct url.
```
target_huex_se = function() {
genedat = "https://target-data.nci.nih.gov/Public/OS/gene_expression_array/L3/gene_core…
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Hello and thank you for your work.
I can't find the results of the paper on the node classification task. Can I have an example reproducing the results please?
Thanks
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As informed by the 'bronchus' definition, we believe the following connection should be made
bronchus [UBERON:0002185] part_of some lung [UBERON:0002048]
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We should reanalyze some good datasets for absolute intensity base quantification datasets where the expression/concentrations are known to benchmark the package and the algorithms behind.
@daiche…
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'''
rawset = ArrayExpress("E-MTAB-16")
'''
trying URL 'https://www.ebi.ac.uk/arrayexpress/files/A-MEXP-1139/A-MEXP-1139.adf.txt'
Content type 'text/plain' length 1025920 bytes (1001 KB)
=========…