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### Description of feature
After parsing the SDRF, we should check if the OpenMS experimental design is also up to the OpenMS standard.
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### Description of the bug
I get the following error when running quant.ms using an sdrf.tsv file:
Error in setnames(x, value) :
Can't assign 4 names to a 0 column data.table
Calls: OpenM…
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e.g. in SDRF we usually have the tolerances, their units, and the instrument name.
BUT: The search engines have restrictions.
They usually take only high_res vs low_res for some additional setting…
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@Silvie menthioned that something went wrong with this experiment - it doesn't have inferred cell type information, so anatomogram shouldn't be displayed on the experiment page but it is there (empty)…
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A large benchmarking study is trying out proteomicslfq together with pmultiqc.
They are looking for a list of metrics. Maybe some of them could be directly added to pmultiqc.
https://docs.google.c…
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I changed the urls for the data and metadata to point to the correct url.
```
target_huex_se = function() {
genedat = "https://target-data.nci.nih.gov/Public/OS/gene_expression_array/L3/gene_core…
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### Description of feature
Inmunopeptidomics is one of the use cases that quantms can try to handle in the same way that we are planning to handle Proteogenomics. For Inmunopeptidomics we will need t…
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http://docs.python-requests.org/en/latest/
https://github.com/reclosedev/requests-cache
"requests" is a module much better than build-in urllib and urllib2.
"request_cache" provides a cache for req…
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It would be nice to have links to the most relevant repositories and resources related to `sdrf-pipelines` in the `README.md`. e.g. to the https://github.com/bigbio/proteomics-metadata-standard repo.
…
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Useful for huge studies where the samples are actually unrelated. Unrelatedness could be one or more of the following:
- Different number of fractions
- Different instruments
- Unrelated conditions…