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Hi, @rcorces @jeffmgranja @jgranja24 @keyuxi
I would llke to copy my entire ARCHR project cluster, embedding, umap ... into a seurat object but I do not succed to copy embeddings
I try many thi…
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seurat_object
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您好大佬，首先感谢您开发的SCP这个神奇的包。这让我单细胞分析的可视化事半功倍。但是最近我遇到了一个比较棘手的问题。原本我使用的是seurat V5版本，但是发现SCP这个包的groupheatmap函数调用的数据格式是seurat V4 的格式。每次作图的时候我都需要把数据聪哥V5转换到V4.
那么问题来了，当我把seurat降到V4版本再次安装SCP包的时候，又提示我，SCP这个包依赖于Ss…
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Hi, I had a read of you preprint and think that SpaNorm looks like a great tool to test on some MERSCOPE and Xenium data I am currently analyzing. I was wondering whether the SpaNorm package can work …
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In Seurat V5 using hdWGCNA, I encountered the following issue: 'Error in UseMethod(generic = "JoinLayers", object = object) : no applicable method for 'JoinLayers' applied to an object of class "c('As…
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When run the tutorial in the document:
https://www.archrproject.com/bookdown/cross-platform-linkage-of-scatac-seq-cells-with-scrna-seq-cells.html
```{r}
projHeme2
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Hi,
Thank you for an amazing package. I was successfully able to run this on my other seurat objects but not with this one. Is it the version issue? Following is the error:
```
query.projected
apal6 updated
1 month ago
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> remotes::install_github('satijalab/seurat-wrappers')
Downloading GitHub repo satijalab/seurat-wrappers@HEAD
Error in utils::download.file(url, path, method = method, quiet = quiet, :
download…
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Hi carmonalab, I love this package, but I wish the errors explained themselves more. The following code leads to an error message below, and I think it's because it didn't detect any Monocytes from my…
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Hi,
can I use Seurat object (with UMAP/clustering already done) just to do the trajectory analysis ?
thanks
gebdu updated
2 months ago