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Proposing a new object/structure that would offer a concise structure to present basic variant information that often accompanies variant annotations, but for which there is no dedicated Statement typ…
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Hello Developers,
I've successfully built a pan-genome consisting of 12 genomes using MC without any problems. Thank you for your kind descriptions on GitHub.
Now, I'm planning to find more SVs …
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Hi, thanks very much for providing this bids-app.
1)Is there a rationale regarding the rather specific definition of n streamlines:
`num_streamlines = 500 * num_nodes * (num_nodes-1)` (cf. line 26…
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Edit: despite the title this link list now contains all kinds of reference material for benchmarking/normal-filtering SV (including CNV) calls on a population level as well on single sample (mostly ce…
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Hi, thankyou for the amazing set of tools!
I am calling structural variations using GRIDSS, for that I first used SvPrep, then GRIDSS followed by GRIPSS. Then later, I used files generated by GRIPS…
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Dear Tobias,
I hope this message finds you well.
I am currently engaged in a project that involves tracking the insertion sites of a transgene in the mouse genome. The transgene in question is ap…
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### 🔍 Search Terms
type side `instanceof` keyword used for instanceof Querying.
related issues:
#202 #31311 #42534 #50714 #55032
### ✅ Viability Checklist
- [X] This wouldn't be a break…
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Just an issue to collect any relevant papers. For example, there's a whole Genome Biology issue on graph genomes at
https://www.biomedcentral.com/collections/graphgenomes (also see "Pangenome Graph…
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Dear Sir/Madam,
I am currently testing the Severus tool for analyzing structural variations (SVs) in two datasets of the COLO829 cell line: one generated by Nanopore sequencing and the other by Pac…
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### OrcaSlicer Version
2.0.0 dev
### OS version
windows 11
### Additional system information
core i7 gen5
amd r5
16 ram
### Printer
CR-10 V2
### How to reproduce
To reproduce the stringing…