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Hi Diener,
would it possible to provide detailed description on the procedures that generated those GEM reference database? I found it quite useful while I am hesitating to use it in my manuscript wi…
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## Expected Behavior
Custom database created for dbCAN v8.
## Current Behavior
Error during the `cstranslate` step.
## Steps to Reproduce (for bugs)
```
# creating custom dbCAN hhsuit…
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### Description of the bug
Docs show that input file should have 3 columns. https://nf-co.re/createtaxdb/dev/docs/usage/#full-samplesheet
However, when the workflow is run, it is failing with vali…
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Hello
I am attempting to run the pipeline on my Mac using the docker profile. The process fails with the warning:
WARN: There's no process matching config selector: fastqc
The environmentl…
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I would like to update the default emu database (NCBI + rrnDB); in your paper you explain to use the build custom db on both separately and then concatenate, but am not sure how to concatenate both fi…
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## Expected Behavior
Taxonomy assignment of viral OTU sequences (nucleotide) using the 2bLCA method against a custom formatted amino acid database from IMG/VR
## Current Behavior
The LCA step die…
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I just cloned the most recent version of StrainPro yesterday. I'm running Strainpro-build on the example "ecoli.fa" file with freshly downloaded taxdump files. The build job has been running for ~15 h…
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### Operating System
Other Linux (please specify below)
### Other Linux
_No response_
### Workflow Version
v2.9.4
### Workflow Execution
Command line (Local)
### Other workflow execution
_No …
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Is there any option to use Silva or other curated database for the classification? if yes how do we create taxid and taxbtd files.