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Create an application to maintain employee details like Names, Id, Location, Products it deals with.
1. Create a page to search for a employee.
2. On selecting the results show the details of the empl…
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Input directory: align/minimap2/.
Number of alignment files to read: 1.
Demultiplexing: off.
Constructing classification system...
Parsing taxon names file: names.dmp... Done.
Parsing taxon n…
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Using kraken2 version 2.1.2.
My code:
```kraken2-build --build --db /scratch/chauk/kraken2/kraken_nt/nt --threads 32```
The error (even after trying with different --thread n values):
```C…
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Hello all. I am trying to run UniProt.ws retrieving information from Uniprot for Leishmania major. I used it before (June 2024), however now is not working and it's showing me this error:
> UNIPROT…
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when build databases jellyfish error on the first step and no other details .
Found jellyfish v1.1.12
Kraken build set to minimize disk writes.
Found 12 sequence files (*.{fna,fa,ffn,fasta,fsa}) …
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We need somewhere a simple vignette documenting recommended standard enrichment workflows using bugsigdb. It could include:
1. (lower priority): data preparation from a couple of the most popular B…
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The database contains many orphaned objects. For example, under the Taxa tab, search on NCBI taxid 114498, then click either the Trees or Matrices tabs. This results in records even though none of the…
ghost updated
8 years ago
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Hello,
I wanted to ask for clarification.
If I had my own database with strain sequences and their corresponding NCBI accession numbers, I assume Kraken 2 would be able to classify those reads at …
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Hi
I am using Kraken2 version 2.1.1. The databases I have used are: nt (sept 2021) and the "standard" Kraken db.
This is the command that I used to run the analyses:
kraken2 --db $MY_DB --fast…
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## Expected Behavior
Run mmseqs databases to create a taxonomic database that uses recent data from uniref, e.g uniref100
## Current Behavior
A recent downloaded uniref100 fasta file has 342650…