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Hi - I am interested to use SUPPA to do differential splicing analysis on drosophila melanogaster and I have been working through the tutorial. I am getting this error when I run
$ suppa.py psiPer…
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## Problem / Motivation
Collect sample JATS XML describing possible categories of a journal, in order to inform a data model for them that can work across multiple organizations/publishers/journals…
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I have encountered a bug while preparing reference sequence of Arabidopsis_thaliana using RSEM (latest developer version).
The [fasta](ftp://ftp.ensemblgenomes.org/pub/release-30/plants/fasta/arabidop…
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Encountered error below when making a danio rerio (zebrafish) recipe:
ggd make-recipe: error: argument -s/--species: invalid choice: 'Danio_rerio' (choose from u'Canis_familiaris', u'Mus_musculus', u…
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Hi,
I tried to run the `daijin assemble`
```
daijin assemble -nd -C 20 -nd daijin.yaml
```
And then I got this error:
```
KeyError in line 40 of /home/raymond/devel/python/thirdparty/anac…
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While reading http://geneontology.org/docs/introduction-to-go-resource/, I noticed a few tiny issues (mostly punctuation) that I would be happy to fix via PRs, but I can't find the website text (maybe…
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Hi,
i ran into the following issue:
> library(feather)
> cisTopicObject_d0 sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Co…
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First of all, thank you for developing HiGlass, this is an awesome tool.
One of the issue we currently have is that when loading a small genome matrix, like _Drosophila melanogaster_, the Hi-C matr…
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eIF4E1 | eukaryotic translation initiation factor 4E1 | Drosophila melanogaster | | protein | FB | 0260/090587/11
This is a . screen and it identifies quite a few upstream things (others will pr…
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Dear sir,
I am sorry to bother you in your busy schedule. Does this pipeline apply to other species, or just bees? Could you tell me about it?