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I wasn't paying enough attention to hifiasm as I should have, and just realized that hifiasm can do trio-binning too.
Though unsure if it'd work on non-HiFi reads (trio-canu does), we should find s…
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Hi,
I am trying to assemble a phased genome of a hexaploid species (expected genome size ~ 4Gb) with 356 GB HiFi reads and 85 GB omni C data. However, the assembly process gets killed due to memory…
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Hi, I'm trying to align pacbio HiFi data with Illumina contigs using Wengan, but I'm getting an error message (error #1)... What causes error 1 in Wengan and how can I fix it?
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Hi:
I am studying a non-model diploid mammal species with a large genome size (~6GB). I have 30X Hifi data, as well as Hi-C data from Dovetail Genomics using their Chicago libraries. I have made an a…
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I'm getting the following error and after this the job seems to be idling. it does not exit out and give me an error but instead keeps running without producing an output. the error is below -
> …
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References to the pipeline on cloud deployment that HiFi had need to be removed, we need to make it easy to understand how to:
1. Migrate from a HiFi -> Vircadia server
2. Deploy a Linux server us…
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Hello, i am working on a plant species which is highly heterozygous and contains 3 trisomic chromosomes. We have both HiFi and HiC data. Is it possible to generate phased assembly using all hic pipel…
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Hello,
I wonder if the method to detect SFS strings could be applied to other highly accurate datasets such as unitigs created from Illumina reads (e.g. PE, 2x150 bp, 500 bp insert size). In the prep…
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This issue ticket is for a task note. Rename the current input parameter `data_type` ("HIFI"/"ONT") to `seq_data_type`. Because we want to add a new input parameter `genome_data_type`.
* `seq_data_…
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Hi,
I installed pacbio_qc with pip install and ran below two commands
` sequana_pacbio_qc --input-directory /data/shared/clinical/LongRead/Data/`
input dir where i have one of BAM file GIAB Tri…