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**EDIT 2024 : A workaround exists for newer Linux kernels https://github.com/thesofproject/sof/issues/6384**
**EDIT : There is no issue on Linux Kernel 5.10 with Ubuntu 22.04.** (unsupported and br…
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Hi,
I am trying to run BASALT on several assemblies from different but similar samples.
Say:
sample 1, with assembly1.fa SR1_r1.fq,SR1_r2.fq
sample 2, with assembly2.fa SR2_r1.fq,SR2_r2.fq
…
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Hi,
I installed pacbio_qc with pip install and ran below two commands
` sequana_pacbio_qc --input-directory /data/shared/clinical/LongRead/Data/`
input dir where i have one of BAM file GIAB Tri…
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Hello,
Is there a minimum length limit for UL and HiFi reads?
Should the reads be filtered by metrics such as length and quality before using hifiasm?
Best wishes.
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Dear authors,
thanks for your great tool 'ccsmeth'. I try calling modifications on a hifi.bam generated from Pacbio Revio platform. However, I only get a empty bam files.
I have noticed the …
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Hi!
First, thanks for the great tool! :)
I am assembling two different genomes - the human genome and the durian (fruit) genome.
For human genome I have around 48x pacbio hifi data and around …
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Hello
I am a beginner and I have a question about metagenomic analysis using HiFi PacBio long reads. In short read metagenomics I have seen in some papers who suggest doing taxonomic and functional…
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Hello!
I've been using odgi to explore graphs I've built from long read assemblies with both Minigraph/Cactus and pggb, and it's been incredibly useful (thank you !)
I have some hifi data for some…
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Hi!
I'm going to use hifiasm on HiFi data (100x coverage) from an individually amplified worm. I have a previous genome assembly version but would like to redo it with the HiFi. Also, I expect it t…
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Hello,
I am trying to work with WM8731. Is there a hook up guide to arduino due which is running your Hi-Fi lib. If you could provide in formation on which pins to connect to Due or a table indicatin…