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for charcoal, there is some interesting logic encoded [here](https://github.com/dib-lab/charcoal/blob/c7fd19205e92461bb5ee09735e05d107e35a1779/charcoal/utils.py#L198) in utils.py --
```
taxlis…
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https://bioentity.link//#/publication/10.1093/genetics/iyae071
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First i download taxonomy:
```
kraken2-build --download-taxonomy --db viralsarsref --use-ftp
Downloading nucleotide gb accession to taxon map... done.
Downloading nucleotide wgs accession to ta…
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Thank you for developing the efficient and accurate genomad analysis process.
However, I still have a question about the results. Previously, I used plasflow to distinguish between chromosomes and…
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Hi there everyone,
First, thanks a lot for the nice pipeline Unicycler seems to be. However, I had a problem during my first runs.
Unicycler stopped running after about 6-8 hours running on 20 t…
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Recently bacterial labs have started to perform iCLIP and our lab is planning to perform experiments on some bacterial strains. It will be a big enhance to support all of this community with a tool av…
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We want to choose, e.g. pathogen vs non-pathogen genomes.
- how many?
- which organisms?
- are we really discriminting pathogens or fakey "pathogens" on the basis of MLST?
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When drawing a shape, add as an option the ability to `track` the shape, i.e. store it in the `Artist#shapes` array.
When clearing or scrolling via `Artist`, the list of shapes needs to be updated (…
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I am analysing some freshwater metagenomes and we really have no idea what to expect when it comes to plasmids (ie size),
I am somewhat stupidly stuck on the "first" sample which takes a very long…
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Howdy,
My name is Per and I would first like to thank you for developing Flye!
Anyway, I have been using Flye to assemble an *E. Coli* isolate from ONT data.
I think that Flye is having 2…