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I want to use the ideal table for the parasite I am working on but it is not supported. I could not find where the functions inherit the table to modify the code.
Would it be possible and simple t…
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Preparing the data to launch viralrecon and to extract the necessary data for read-bioinfo-metadata is a time-consuming process that has to be done manually right now. It could be rather easily automa…
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**Submitting author:** @JeanMainguy (Jean Mainguy)
**Repository:** https://github.com/genotoul-bioinfo/Binette
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.0
**Editor:** @arf…
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Hi, have installed the bioinfo environment on a few of my Apple computers with no problem, but I just got a new MacBook Pro (M3 chip, running macOS Sonoma 14.6.1) and I am having a problem with one of…
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The 'RNA-seq Data Exploration' notebook covers:
1. Reading in the salmon quant and sample info, including exploring data structure
2. Importing scaled TPM (excercise)
3. Filtering the genes
4. R…
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I have used XAM.jl to treat BAM files. Today I came across an error when opening a BAM file generated by HISAT2 version 2.2.0. No error occurred for a BAM file generated by HISAT2 version 2.1.0 (f…
yuifu updated
4 years ago
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After creating a conda and installing pyscenic:
```
conda create -y -n pyscenic python=3.10
conda activate pyscenic
pip install pyscenic
```
I installed scanpy with `pip install scanpy`
Bu…
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With oncotator 1.9.8 I have this error:
```
2018-03-20 09:37:43,124 INFO [oncotator.utils.ConfigUtils:197] Could not find config file (vcf.in.config). Trying configs/ prepend.
2018-03-20 09:37:43…
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As briefly discussed in today's Bioinfo planning meeting, this should cover:
- [x] transfer data tracking. Similar to how EGA transfer works, we may use a git repo to host information for SONG anal…