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Encountered an error and have tried it multiple times
Below are the error messsage;
Downloading VIBRANT databases to /home/priscilla/anaconda3/envs/vibrant/share/vibrant-1.0.1...
This scrip…
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Encountered error and have tried it multiple times
Below is the error message;
Downloading VIBRANT databases to /home/priscilla/anaconda3/envs/vibrant/share/vibrant-1.0.1...
This script will …
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Still needs work, esp around talking about what sourmash is actually doing. But first pass!
Charcoal identifies and removes contamination in metagenome-assembled genomes using k-mer based methods.
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When implementing a circuit with AraC, the error
"Error using regexp
All cells must be char row vectors.
Error in txtl_protein_AraC (line 68)
p = regexp(listOfSpecies,'^protein AraC(-lva)?$'…
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REPRO
1. Install a clean version of Aquarium
2. import the following community workflows (the three on the www.aquarium.bio > Community page plus the standard libraries)
- pcr-models.aq
- aq-s…
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Hi Bakta developers!
Thank you for a great tool for plasmid and bacterial genome annotation!
I am using Bakta specifically to annotate the origin of replication. In some of my plasmid genomes, Ba…
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It’s sort of difficult to keep pace with all your different releases😀. So, which one should I use? Kraken, KrakenUniq or centrifuge??? I just have started centrifuge; should I move to KrakenUniq?
T…
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Hello,
I am having a couple of problems when trying to classify nanopore reads with PanGIA.
1. When trying to classify a mix of 15 isolates PanGIA exits with the following error:
(pangia.py -i /h…
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因为道长跟我说,要是能够用酵母人工合成大麻,会很酷炫。当时我就在想了想,其实抛去需要的基因组(synthetic gene circuits)我觉得技术难点对我们来说,应该是DIY bioreactor + directed evolution的一套系统。那么我以前帝国的一个老师,Mark Isalan 做过一个很酷的利用Bacteria Phage 来达到optimal protein int…