-
I have snRNA-seq dataset from literature called sc in S4 Seurat.
I converted it to SingleCellExperiment using this function:
sc.sce data->listData-> logcounts
logcounts is a S4 [2000x220170]…
-
* **PTHR ID & PTN node:**
PTN000122119 (PTHR11118)
* **Sequences with problematic annotation (ID + gene/protein name):**
Human RTCB and orthologs.
* **Type of Issue: Erroneous source or errone…
sjm41 updated
5 months ago
-
# Data overlap
## Generate a `data overlap matrix`. Overlapping to the `ATAC-Seq differential accessible regions`
- [x] **ChIP-Seq:** `TRUE` or `FALSE` of there is an overlap between ATAC-Seq an…
-
I tried to use `as.matrix()` to change a `IterableMatrix` into a normal matrix or `dgCMatrix`, the matrix is huge but smaller than 2^31 so it shouldn't exceed the dgCMatrix limit, but I still got an e…
-
dsb does not run when half the samples are rna + adt, half the samples are rna only (and no intersection between rna,adt is taken).
fix is to take the intersection of the background: mu.pp.inters…
-
Hello, thanks for writing these functions! I am getting the following error when trying to rename genes:
```r
RenameGenesSeurat(s16,newnames = df16$Approved_symbol,assay = "RNA")
```
This is the …
-
It looks like FASTP is not able to detect *automatically* the adapter at all for miRNA-seq data.
For example, FASTP is not able to detect *automatically* the adapter in the SE FASTQ file from https…
-
Things that would need to be changed
- change spade's `--meta` to `--rna`
-
* 'GO:0006269 DNA replication, synthesis of RNA primer' -> 27 EXP
* * '[GO:1902295](http://amigo.geneontology.org/amigo/term/GO:1902295#display-lineage-tab) synthesis of RNA primer involved in cell …
-
**Describe the Housekeeping**
Step 1: Find records if in Lighthouse_sample table & LabWhere
select distinct plate_barcode from lighthouse_sample where plate_barcode like '% %';
25 records
RNA0085…